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基于氧化石墨烯与金属离子的逻辑模型设计与可控性验证

王璐慧 王越 钱梦瑶 董亚非

王璐慧, 王越, 钱梦瑶, 董亚非. 基于氧化石墨烯与金属离子的逻辑模型设计与可控性验证[J]. 电子与信息学报, 2020, 42(6): 1410-1419. doi: 10.11999/JEIT190872
引用本文: 王璐慧, 王越, 钱梦瑶, 董亚非. 基于氧化石墨烯与金属离子的逻辑模型设计与可控性验证[J]. 电子与信息学报, 2020, 42(6): 1410-1419. doi: 10.11999/JEIT190872
Luhui WANG, Yue WANG, Mengyao QIAN, Yafei DONG. Logical Model Design and Controllability Verification Based on Graphene Oxide and Metal Ions[J]. Journal of Electronics & Information Technology, 2020, 42(6): 1410-1419. doi: 10.11999/JEIT190872
Citation: Luhui WANG, Yue WANG, Mengyao QIAN, Yafei DONG. Logical Model Design and Controllability Verification Based on Graphene Oxide and Metal Ions[J]. Journal of Electronics & Information Technology, 2020, 42(6): 1410-1419. doi: 10.11999/JEIT190872

基于氧化石墨烯与金属离子的逻辑模型设计与可控性验证

doi: 10.11999/JEIT190872
基金项目: 国家自然科学基金(61572302),陕西省自然科学基础研究计划(2020JM-298),陕西师范大学博士研究生自由探索项目(2019TS075)
详细信息
    作者简介:

    王璐慧:女,1993年,博士生,研究方向为生物信息学、DNA计算、生物传感器

    王越:女,1994年,硕士生,研究方向为DNA计算、合成生物学

    钱梦瑶:女,1995年,硕士生,研究方向为DNA计算、生物传感器

    董亚非:男,1963年,教授,研究方向为生物信息学、DNA计算、生物传感器、合成生物学

    通讯作者:

    董亚非 dongyf@snnu.edu.cn

  • 中图分类号: TP301

Logical Model Design and Controllability Verification Based on Graphene Oxide and Metal Ions

Funds: The National Natural Science Foundation of China (61572302), The Basic Research Plan of Natural Science of Shaanxi Province(2020JM-298), The Free Exploration Project for Doctoral Students of Shaanxi Normal University (2019TS075)
  • 摘要: 作为20世纪末诞生的新型学科,生物计算现已成为前沿科学研究的热点。与电子计算机相似,生物计算机的构建需要多种分子逻辑门,而将氧化石墨烯(GO)、重金属离子等具有生化特性的物质引入分子逻辑门的设计中,有望为研究提出新思路。此外,分子逻辑门最终应在生物实验层面上实现,这就需要对生物实验各个条件的可控性及可控范围进行研究。基于这样的想法,该文以氧化石墨烯和金属离子为基础设计了多个逻辑门,通过仿真实验、电泳实验、正交实验、荧光实验等验证可行性的同时,对实验的可控性及可控范围有进一步研究,一方面证明了所设计逻辑门可行性,另一方面也发现其有运用于实际样品检测的能力。
  • 图  1  YES门与AND门原理及真值表

    图  2  YES门及AND门仿真结果

    图  3  YES门PAGE电泳结果

    图  4  AND门琼脂糖电泳结果

    图  5  实验条件可控性验证及优化

    图  6  目标响应范围及线性相关性

    图  7  基于金属离子的多功能模型原理及真值表

    图  8  基于金属离子的多功能模型仿真结果

    图  9  实验条件可控性验证

    图  10  汞离子与银离子分别存在时目标响应范围及线性相关性

    图  11  基于氧化石墨烯与金属离子的3输入逻辑门原理、真值表及电泳结果

    表  1  DNA链序列

    链名称链序列(5’-3’)
    TargetGACATTCATCACGCTCAATCACTACTT
    H1TAMRA - AAGTAGTGATTGAGCGTGATGAATGTC
    HH1AAGTAGTGATTGAGCGTGATGAATGTCACTACTTCAACTCGCATTCATCACGCTCAATC
    HH2TAMRA - TGATGAATGCGAGTTGAAGTAGTGACATTCATCACGCTCAATCACTACTTCAACTCGCA
    下载: 导出CSV

    表  2  DNA链序列

    链名称链序列 (5’–3’)
    AFAM–GTACACTGTAAAAAAAAAAAAAAACACTGTG–BHQ
    下载: 导出CSV

    表  3  汞、银离子正交结果

    实验号A链浓度
    (A)
    离子浓度
    (B)
    反应时间
    (C)
    F0–F
    1A1B1C11239.41042.8
    2A1B2C31572.91806.4
    3A1B3C21535.12010.4
    4A2B1C33243.21090.8
    5A2B2C26569.54773.2
    6A2B3C17675.07103.0
    7A3B1C23723.71201.6
    8A3B2C18459.99090.4
    9A3B3C311151.310298.2
    下载: 导出CSV
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出版历程
  • 收稿日期:  2019-11-04
  • 修回日期:  2020-04-16
  • 网络出版日期:  2020-05-12
  • 刊出日期:  2020-06-22

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