Logical Model Design and Controllability Verification Based on Graphene Oxide and Metal Ions
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摘要: 作为20世纪末诞生的新型学科,生物计算现已成为前沿科学研究的热点。与电子计算机相似,生物计算机的构建需要多种分子逻辑门,而将氧化石墨烯(GO)、重金属离子等具有生化特性的物质引入分子逻辑门的设计中,有望为研究提出新思路。此外,分子逻辑门最终应在生物实验层面上实现,这就需要对生物实验各个条件的可控性及可控范围进行研究。基于这样的想法,该文以氧化石墨烯和金属离子为基础设计了多个逻辑门,通过仿真实验、电泳实验、正交实验、荧光实验等验证可行性的同时,对实验的可控性及可控范围有进一步研究,一方面证明了所设计逻辑门可行性,另一方面也发现其有运用于实际样品检测的能力。Abstract: As a new subject born at the end of the 20th century, biological computing has become a hot spot of frontier scientific research. Similar to the electronic computer, the construction of biological computer needs a variety of molecular logic gates, and the introduction of Graphene Oxide(GO), heavy metal ion heavy metal particles and other substances with biochemical characteristics into the design of molecular logic gates is expected to put forward new ideas for research. In addition, molecular logic gates should be realized at the level of biological experiments, which requires the study of controllability and controllable range of various conditions of biological experiments. Based on this idea, several logic gates are designed based on graphene oxide and metal ions. The feasibility is verified by simulation experiment, electrophoresis experiment, orthogonal experiment, fluorescence experiment, etc. At the same time, the controllability and controllable range of the experiment are further researched. On the one hand, the feasibility of the designed logic gate is proved, on the other hand, it be found that can be applied to actual samples.
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Key words:
- Biological computing /
- Logic gate /
- Controllability /
- Graphene Oxide (GO) /
- Metal ions
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表 1 DNA链序列
链名称 链序列(5’-3’) Target GACATTCATCACGCTCAATCACTACTT H1 TAMRA - AAGTAGTGATTGAGCGTGATGAATGTC HH1 AAGTAGTGATTGAGCGTGATGAATGTCACTACTTCAACTCGCATTCATCACGCTCAATC HH2 TAMRA - TGATGAATGCGAGTTGAAGTAGTGACATTCATCACGCTCAATCACTACTTCAACTCGCA 表 2 DNA链序列
链名称 链序列 (5’–3’) A FAM–GTACACTGTAAAAAAAAAAAAAAACACTGTG–BHQ 表 3 汞、银离子正交结果
实验号 A链浓度
(A)离子浓度
(B)反应时间
(C)F0–F 1 A1 B1 C1 1239.4 1042.8 2 A1 B2 C3 1572.9 1806.4 3 A1 B3 C2 1535.1 2010.4 4 A2 B1 C3 3243.2 1090.8 5 A2 B2 C2 6569.5 4773.2 6 A2 B3 C1 7675.0 7103.0 7 A3 B1 C2 3723.7 1201.6 8 A3 B2 C1 8459.9 9090.4 9 A3 B3 C3 11151.3 10298.2 -
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