Advanced Search
Volume 30 Issue 5
Dec.  2010
Turn off MathJax
Article Contents
Liu Wen-bing, Zhu Xiang-ou, Wang Wiang-hong, Zhang Qiang, Ma Run-nian. A New Method to Optimize the Template Set in DNA Computing[J]. Journal of Electronics & Information Technology, 2008, 30(5): 1131-1135. doi: 10.3724/SP.J.1146.2006.01640
Citation: Liu Wen-bing, Zhu Xiang-ou, Wang Wiang-hong, Zhang Qiang, Ma Run-nian. A New Method to Optimize the Template Set in DNA Computing[J]. Journal of Electronics & Information Technology, 2008, 30(5): 1131-1135. doi: 10.3724/SP.J.1146.2006.01640

A New Method to Optimize the Template Set in DNA Computing

doi: 10.3724/SP.J.1146.2006.01640
  • Received Date: 2006-10-25
  • Rev Recd Date: 2007-03-23
  • Publish Date: 2008-05-19
  • The encoding issue is a most fundamental one in DNA based computing. In this paper, the various factors that influence the encoding problem and the general idea of the template encoding method are first introduced. Then the reason of the shift hybridisation occurred in DNA computing is presented. And a new method is proposed to search template set with high shift distance. Additionally, to increase the search space can also increase the number of template string.
  • loading
  • Garzon M, Neathery P, and Deaton P. A new metric for DNAcomputing [C]. In Proc. of 2nd Annual Genetic ProgrammingConference, Morgan Kaufmann, 1997: 472-47.

    Adleman L. Molecular computation of solution to combinatorialproblems [J].Science.1994, 266:1021-1024[2]Garzon M, et al.. A new metric for DNA computing [C].Proceedings of the 2nd Annual Genetic ProgrammingConference GP-97, Morgan Kaufmann, Stanford University,1997: 472-487.[3]Garzon M, Deaton R, Nino L F, Stevens S E , and Wittner M.Genome encoding for DNA computing [C]. TheThirdDIMACS Workshop on DNA-based Computing,Uinversity of Pennsylvania, 1997: 230-237.[4]Baum E B. DNA sequences useful for computation [C]. Proc.Second Annual Meeting on DNABased Computers, AmericanMathematical Society, Princton University, 1996: 235-242.[5]Feldkamp, et al.. A DNA sequence compile[C]. Proceedings of6th DIMACS Workshop on DNA Based Computers,Netherlands, 2000: 253-257.[6]Suyama A, et al.. DNA chips-integrated chemical circuits forDNA diagnosis and DNA computers [C]. Proc. 3rd InternationalMicromachine Symp., Tokyo, 1997: 7-12.[7] Morey J. Encoding Choices for Error Resistant DNAComputers[OL]. www.csd.uwo.ca /~morey /dnatalk/kevin/dna/dnaerror.html.[8]Braich R, Johnson C, Rothemund P, and Adleman L.Solution of a satisfiability problem on a Gel-based DNAcomputer [C]. DNA 2000, 2001, LCNS 2054: 27-42.[9]Frutos A, et al.. Demonstration of a word design strategy forDNA computing on surface [J].Nucleic Acids Research.1997,25(23):4748-4757[10]Liu Wenbin, Wang Shudong, Gao Lin,and Xu Jin. DNAsequence design based on template strategy [J]. Chem. Info.Comput. Sci, 2003, 43(6): 2014-2018.[11]SantaLucia J, Allawi H, and Seneviratne P. Improved nearest-neighbor parameters for predicting DNA duplex stability [J].Biochemistry.1996, 35(11):3555-3562[12]刘文斌. DNA 计算中的编码问题及模型研究. [博士论文], 武汉:华中科技大学, 2004.1.Liu Wen-bin. Research on the Enconding Problem andAlgorithms of DNA Computing. [Dissertation(Doctor)],Huazhong University of Science Technology, Wuhan, China,2004.1..
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Article Metrics

    Article views (3162) PDF downloads(818) Cited by()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return